LuxR- and luxI-type quorum-sensing circuits are prevalent in members of the Populus deltoides microbiome.
Identifieur interne : 002598 ( Main/Exploration ); précédent : 002597; suivant : 002599LuxR- and luxI-type quorum-sensing circuits are prevalent in members of the Populus deltoides microbiome.
Auteurs : Amy L. Schaefer [États-Unis] ; Colin R. Lappala ; Ryan P. Morlen ; Dale A. Pelletier ; Tse-Yuan S. Lu ; Patricia K. Lankford ; Caroline S. Harwood ; E Peter GreenbergSource :
- Applied and environmental microbiology [ 1098-5336 ] ; 2013.
Descripteurs français
- KwdFr :
- Acyl-butyrolactones (analyse), Bactéries (génétique), Détection du quorum (MeSH), Facteurs de transcription (génétique), Microbiote (MeSH), Phénomènes physiologiques bactériens (MeSH), Populus (microbiologie), Protéines bactériennes (génétique), Protéines de répression (génétique), Racines de plante (microbiologie), Techniques de biocapteur (MeSH), Transactivateurs (génétique).
- MESH :
- analyse : Acyl-butyrolactones.
- génétique : Bactéries, Facteurs de transcription, Protéines bactériennes, Protéines de répression, Transactivateurs.
- microbiologie : Populus, Racines de plante.
- Détection du quorum, Microbiote, Phénomènes physiologiques bactériens, Techniques de biocapteur.
English descriptors
- KwdEn :
- Acyl-Butyrolactones (analysis), Bacteria (genetics), Bacterial Physiological Phenomena (MeSH), Bacterial Proteins (genetics), Biosensing Techniques (MeSH), Microbiota (MeSH), Plant Roots (microbiology), Populus (microbiology), Quorum Sensing (MeSH), Repressor Proteins (genetics), Trans-Activators (genetics), Transcription Factors (genetics).
- MESH :
- chemical , analysis : Acyl-Butyrolactones.
- genetics : Bacteria, Bacterial Proteins, Repressor Proteins, Trans-Activators, Transcription Factors.
- microbiology : Plant Roots, Populus.
- Bacterial Physiological Phenomena, Biosensing Techniques, Microbiota, Quorum Sensing.
Abstract
We are interested in the root microbiome of the fast-growing Eastern cottonwood tree, Populus deltoides. There is a large bank of bacterial isolates from P. deltoides, and there are 44 draft genomes of bacterial endophyte and rhizosphere isolates. As a first step in efforts to understand the roles of bacterial communication and plant-bacterial signaling in P. deltoides, we focused on the prevalence of acyl-homoserine lactone (AHL) quorum-sensing-signal production and reception in members of the P. deltoides microbiome. We screened 129 bacterial isolates for AHL production using a broad-spectrum bioassay that responds to many but not all AHLs, and we queried the available genome sequences of microbiome isolates for homologs of AHL synthase and receptor genes. AHL signal production was detected in 40% of 129 strains tested. Positive isolates included members of the Alpha-, Beta-, and Gammaproteobacteria. Members of the luxI family of AHL synthases were identified in 18 of 39 proteobacterial genomes, including genomes of some isolates that tested negative in the bioassay. Members of the luxR family of transcription factors, which includes AHL-responsive factors, were more abundant than luxI homologs. There were 72 in the 39 proteobacterial genomes. Some of the luxR homologs appear to be members of a subfamily of LuxRs that respond to as-yet-unknown plant signals rather than bacterial AHLs. Apparently, there is a substantial capacity for AHL cell-to-cell communication in proteobacteria of the P. deltoides microbiota, and there are also Proteobacteria with LuxR homologs of the type hypothesized to respond to plant signals or cues.
DOI: 10.1128/AEM.01417-13
PubMed: 23851092
PubMed Central: PMC3754149
Affiliations:
Links toward previous steps (curation, corpus...)
Le document en format XML
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There is a large bank of bacterial isolates from P. deltoides, and there are 44 draft genomes of bacterial endophyte and rhizosphere isolates. As a first step in efforts to understand the roles of bacterial communication and plant-bacterial signaling in P. deltoides, we focused on the prevalence of acyl-homoserine lactone (AHL) quorum-sensing-signal production and reception in members of the P. deltoides microbiome. We screened 129 bacterial isolates for AHL production using a broad-spectrum bioassay that responds to many but not all AHLs, and we queried the available genome sequences of microbiome isolates for homologs of AHL synthase and receptor genes. AHL signal production was detected in 40% of 129 strains tested. Positive isolates included members of the Alpha-, Beta-, and Gammaproteobacteria. Members of the luxI family of AHL synthases were identified in 18 of 39 proteobacterial genomes, including genomes of some isolates that tested negative in the bioassay. Members of the luxR family of transcription factors, which includes AHL-responsive factors, were more abundant than luxI homologs. There were 72 in the 39 proteobacterial genomes. Some of the luxR homologs appear to be members of a subfamily of LuxRs that respond to as-yet-unknown plant signals rather than bacterial AHLs. Apparently, there is a substantial capacity for AHL cell-to-cell communication in proteobacteria of the P. deltoides microbiota, and there are also Proteobacteria with LuxR homologs of the type hypothesized to respond to plant signals or cues.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">23851092</PMID><DateCompleted><Year>2014</Year><Month>03</Month><Day>10</Day></DateCompleted><DateRevised><Year>2018</Year><Month>11</Month><Day>13</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1098-5336</ISSN><JournalIssue CitedMedium="Internet"><Volume>79</Volume><Issue>18</Issue><PubDate><Year>2013</Year><Month>Sep</Month></PubDate></JournalIssue><Title>Applied and environmental microbiology</Title><ISOAbbreviation>Appl Environ Microbiol</ISOAbbreviation></Journal><ArticleTitle>LuxR- and luxI-type quorum-sensing circuits are prevalent in members of the Populus deltoides microbiome.</ArticleTitle><Pagination><MedlinePgn>5745-52</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1128/AEM.01417-13</ELocationID><Abstract><AbstractText>We are interested in the root microbiome of the fast-growing Eastern cottonwood tree, Populus deltoides. There is a large bank of bacterial isolates from P. deltoides, and there are 44 draft genomes of bacterial endophyte and rhizosphere isolates. As a first step in efforts to understand the roles of bacterial communication and plant-bacterial signaling in P. deltoides, we focused on the prevalence of acyl-homoserine lactone (AHL) quorum-sensing-signal production and reception in members of the P. deltoides microbiome. We screened 129 bacterial isolates for AHL production using a broad-spectrum bioassay that responds to many but not all AHLs, and we queried the available genome sequences of microbiome isolates for homologs of AHL synthase and receptor genes. AHL signal production was detected in 40% of 129 strains tested. Positive isolates included members of the Alpha-, Beta-, and Gammaproteobacteria. Members of the luxI family of AHL synthases were identified in 18 of 39 proteobacterial genomes, including genomes of some isolates that tested negative in the bioassay. Members of the luxR family of transcription factors, which includes AHL-responsive factors, were more abundant than luxI homologs. There were 72 in the 39 proteobacterial genomes. Some of the luxR homologs appear to be members of a subfamily of LuxRs that respond to as-yet-unknown plant signals rather than bacterial AHLs. Apparently, there is a substantial capacity for AHL cell-to-cell communication in proteobacteria of the P. deltoides microbiota, and there are also Proteobacteria with LuxR homologs of the type hypothesized to respond to plant signals or cues.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Schaefer</LastName><ForeName>Amy L</ForeName><Initials>AL</Initials><AffiliationInfo><Affiliation>Department of Microbiology, University of Washington, Seattle, Washington, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Lappala</LastName><ForeName>Colin R</ForeName><Initials>CR</Initials></Author><Author ValidYN="Y"><LastName>Morlen</LastName><ForeName>Ryan P</ForeName><Initials>RP</Initials></Author><Author ValidYN="Y"><LastName>Pelletier</LastName><ForeName>Dale A</ForeName><Initials>DA</Initials></Author><Author ValidYN="Y"><LastName>Lu</LastName><ForeName>Tse-Yuan S</ForeName><Initials>TY</Initials></Author><Author 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Caroline S" uniqKey="Harwood C" first="Caroline S" last="Harwood">Caroline S. Harwood</name><name sortKey="Lankford, Patricia K" sort="Lankford, Patricia K" uniqKey="Lankford P" first="Patricia K" last="Lankford">Patricia K. Lankford</name><name sortKey="Lappala, Colin R" sort="Lappala, Colin R" uniqKey="Lappala C" first="Colin R" last="Lappala">Colin R. Lappala</name><name sortKey="Lu, Tse Yuan S" sort="Lu, Tse Yuan S" uniqKey="Lu T" first="Tse-Yuan S" last="Lu">Tse-Yuan S. Lu</name><name sortKey="Morlen, Ryan P" sort="Morlen, Ryan P" uniqKey="Morlen R" first="Ryan P" last="Morlen">Ryan P. Morlen</name><name sortKey="Pelletier, Dale A" sort="Pelletier, Dale A" uniqKey="Pelletier D" first="Dale A" last="Pelletier">Dale A. Pelletier</name></noCountry><country name="États-Unis"><region name="Washington (État)"><name sortKey="Schaefer, Amy L" sort="Schaefer, Amy L" uniqKey="Schaefer A" first="Amy L" last="Schaefer">Amy L. Schaefer</name></region></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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